Osebna bibliografija objavljenih člankov, Dr. Tomaž Urbič

Izvirni znanstveni članki

1. STRNIŠA, Filip, URBIČ, Tomaž, PLAZL, Igor. A lattice Boltzmann study of 2D steady and unsteady flows around a confined cylinder. Journal of the Brazilian Society of Mechanical Sciences and Engineering. [Print ed.]. Feb. 2020, vol. 42, iss. 2, str. 1-13.

2. URBIČ, Tomaž, DIAS, Cristiano L. Thermodynamic properties of amyloid fibrils : a simple model of peptide aggregation. Fluid phase equilibria. [Print ed.]. 15 Jun. 2019, vol. 489, str. 104-110.

3. PRŠLJA, Paulina, LOMBA, Enrique, GÓMEZ-ÁLVAREZ, Paula, URBIČ, Tomaž, NOYA, Eva G. Adsorption of water, methanol, and their mixtures in slit graphite pores. The Journal of chemical physics. 14 Jan. 2019, vol. 150, iss. 2, str. 1-13.

4. URBIČ, Tomaž. Modelling water with simple Mercedes-Benz models. Molecular simulation. 2019, vol. 45, iss. 4/5, str. 279-294.

5. SIMONČIČ, Matjaž, URBIČ, Tomaž. Hydrogen bonding between hydrides of the upper-right part of the periodic table. Chemical physics. [Print ed.]. May 2018, vol. 507, str. 34-43.

6. PRIMORAC, Tomislav, POŽAR, Martina, SOKOLIĆ, Franjo, ZORANIĆ, Larisa, URBIČ, Tomaž. A simple two dimensional model of methanol. Journal of molecular liquids. [Print ed.]. Jul. 2018, vol. 262, str. 46-57.

7. PERERA, Aurélien, URBIČ, Tomaž. Clustering in complex ionic liquids in two dimensions. Journal of molecular liquids. [Print ed.]. Sep. 2018, vol. 265, str. 307-315,

8. URBIČ, Tomaž. Two dimensional fluid with one site-site associating point. Monte Carlo, integral equation and thermodynamic perturbation theory study. Journal of molecular liquids. [Print ed.]. 15 Nov. 2018, vol. 270, str. 87-96,

9. URBIČ, Tomaž, DILL, Ken A. Water is a cagey liquid. Journal of the American Chemical Society : JACS. 12 Dec. 2018, vol. 140, iss. 49, str. 17106-17113,

10. GLADOVIĆ, Martin, BREN, Urban, URBIČ, Tomaž. Thermodynamic properties of water in confined environments : a Monte Carlo study. Molecular Physics. [Print ed.]. 2018, vol. 116, iss. 9, str. 1133-1144,

11. PERERA, Aurélien, URBIČ, Tomaž. Charge ordering in two-dimensional ionic liquids. Physica. A, Statistical mechanics and its applications. [Print ed.]. Apr. 2018, vol. 495, str. 393-404,

12. URBIČ, Tomaž, DILL, Ken A. Hierarchy of anomalies in the two-dimensional Mercedes-Benz model of water. Physical review. E. 2018, vol. 98, iss. 3, str. 1-9,

13. URBIČ, Tomaž, NAJEM, Sara, DIAS, Cristiano L. Thermodynamic properties of amyloid fibrils in equilibrium. Biophysical chemistry. [Print ed.]. Dec. 2017, vol. 231, str. 155-160,

14. PRAŠNIKAR, Anže, URBIČ, Tomaž, PLAZL, Igor. Microscale technology and biocatalytic processes. Part 1, How to minimize the gap between research and industry. Chimica oggi = Chemistry today. 2017, vol. 35, iss. 3, str. 18-20,

15. PRAŠNIKAR, Anže, URBIČ, Tomaž, PLAZL, Igor. Microscale technology and biocatalytic processes. Part 2, Scale-up case of surface enzyme-catalyzed biotransformation. Chimica oggi = Chemistry today. 2017, vol. 35, iss. 4, str. 12-14,

16. URBIČ, Tomaž, MOHORIČ, Tomaž. Effects of translational and rotational degrees of freedom on properties of the Mercedes-Benz water model. The Journal of chemical physics. 2017, vol. 146, iss. 9, str. 1-9,

17. URBIČ, Tomaž. Integral equation and thermodynamic perturbation theory for a two-dimensional model of dimerising fluid. Journal of molecular liquids. [Print ed.]. Feb. 2017, vol. 228, str. 32-37,

18. STEPANENKO, O., URBIČ, Tomaž, KALYUZHNYI, Yurij V. Second-order thermodynamic perturbation theory for the inverse patchy colloids. Journal of molecular liquids. [Print ed.]. Feb. 2017, vol. 228, str. 143-149,

19. URBIČ, Tomaž. Integral equation and thermodynamic perturbation theory for a two-dimensional model of chain-forming fluid. Journal of molecular liquids. [Print ed.]. Jul. 2017, vol. 238, str. 129-135,

20. PRŠLJA, Paulina, AUPIČ, Jana, URBIČ, Tomaž. Thermodynamics and structure of a two-dimensional asymmetric electrolyte by integral equation theory. Molecular Physics. [Print ed.]. 2017, vol. 115, iss. 13, str. 1572-1581,

21. URBIČ, Tomaž. Liquid part of the phase diagram and percolation line for two-dimensional Mercedes-Benz water. Physical review E. 2017, vol. 96, iss. 3, str. 1-7,

22. URBIČ, Tomaž, DILL, Ken A. Analytical theory of the hydrophobic effect of solutes in water. Physical review. E. 2017, vol. 96, iss. 3, str. 1-12,

23. PRIBEC, Ivan, URBIČ, Tomaž, PLAZL, Igor. Modelling reaction-diffusion dynamics in microsystems. V: KRAVANJA, Zdravko (ur.), BOGATAJ, Miloš (ur.). 26th European Symposium on Computer Aided Process Engineering : [Portorož, Slovenia, 12th to 15th of June 2016]. Amsterdam; Oxford; Cambridge (MA): Elsevier, cop. 2016. Vol. 38, str. 1623-1628,

24. URBIČ, Tomaž. Properties of the two-dimensional heterogeneous Lennard-Jones dimers : an integral equation study. The Journal of chemical physics. 2016, vol. 145, iss. 19, str. 1-8,

25. URBIČ, Tomaž. Liquid-liquid critical point in a simple analytical model of water. Physical review. E. 2016, vol. 94, iss. 4, str. 1-5,

26. HUŠ, Matej, ŽAKELJ, Gašper, URBIČ, Tomaž. Properties of methanol-water mixtures in a coarse-grained model. Acta chimica slovenica. [Tiskana izd.]. 2015, vol. 62, no. 3, str. 524-530.

27. KRŽIŠNIK, Klemen, URBIČ, Tomaž. Amino acid correlation functions in protein structures. Acta chimica slovenica. [Tiskana izd.]. 2015, vol. 62, no. 3, str. 574-581,

28. AUPIČ, Jana, URBIČ, Tomaž. A structural study of a two-dimensional electrolyte by Monte Carlo simulations. The Journal of chemical physics. 2015, vol. 142, no. 1, art. no. 014506 (str. 1-8),

29. MUNAÒ, Gianmarco, URBIČ, Tomaž. Structure and thermodynamics of core-softened models for alcohols. The Journal of chemical physics. 2015, vol. 142, iss. 21, str. 1-9,

30. KURTJAK, Mario, URBIČ, Tomaž. A simple water model in the presence of inert Lennard-Jones obstacles II : the hydrophobic effect. Molecular Physics. [Print ed.]. 2015, vol. 113, iss. 7, str. 727-738,

31. URBIČ, Tomaž. Ions increase strength of hydrogen bond in water. Chemical Physics Letters. [Print ed.]. 2014, vol. 610/611, no. 1, str. 159-162,

32. MOHORIČ, Tomaž, URBIČ, Tomaž, HRIBAR-LEE, Barbara. The application of the integral equation theory to study the hydrophobic interaction. The Journal of chemical physics. 2014, vol. 140, no. 2, art. no. 024502 (6 str.),

33. URBIČ, Tomaž, DIAS, Cristiano L. Properties of the Lennard-Jones dimeric fluid in two dimensions : an integral equation study. The Journal of chemical physics. 2014, vol. 140, no. 9, art. no. 094703 (str. 1-7),

34. HUŠ, Matej, URBIČ, Tomaž. The hydrophobic effect in a simple isotropic water-like model : Monte Carlo study. The Journal of chemical physics. 2014, vol. 140, no. 14, art. no. 144904 (str. 1-8)

35. URBIČ, Tomaž, DIAS, Cristiano L. Hydration of non-polar anti-parallel ß-sheets. The Journal of chemical physics. 2014, vol. 140, no. 16, art. no. 165101 (str. 1-6)

36. AUPIČ, Jana, URBIČ, Tomaž. Thermodynamics and structure of a two-dimensional electrolyte by integral equation theory. The Journal of chemical physics. 2014, vol. 140, no. 18, art. no. 184509 (str. 1-8),

37. HUŠ, Matej, MUNAÒ, Gianmarco, URBIČ, Tomaž. Properties of a soft-core model of methanol : an integral equation theory and computer simulation study. The Journal of chemical physics. 2014, vol. 141, no. 16, art. no. 164505 (str. 1-8)

38. KURTJAK, Mario, URBIČ, Tomaž. Water in the presence of inert Lennard-Jones obstacles. Molecular Physics. [Print ed.]. 2014, vol. 112, no. 8, str. 1132-1148,

39. HUŠ, Matej, URBIČ, Tomaž. Thermodynamics and the hydrophobic effect in a core-softened model and comparison with experiments. Physical review. E, Statistical, nonlinear, and soft matter physics. 2014, vol. 90, no. 2, art. no. 022115 (str. 1-10),

40. HUŠ, Matej, URBIČ, Tomaž. Existence of a liquid-liquid phase transition in methanol. Physical review. E, Statistical, nonlinear, and soft matter physics. 2014, vol. 90, no. 6, art. no. 062306 (str. 1-12),

41. URBIČ, Tomaž. Two-dimensional core-softened model with water like properties. Study by thermodynamic perturbation theory. Condensed matter physics. 2013, vol. 16, no. 4, art. no. 43605 (str. 1-7),

42. HUŠ, Matej, ZALAR, Matja, URBIČ, Tomaž. Correctness of certain integral equation theories for core-softened fluids. The Journal of chemical physics. 2013, vol. 138, no. 22, art. no. 224508 (9 str.),

43. MOHORIČ, Tomaž, URBIČ, Tomaž, HRIBAR-LEE, Barbara. The application of the thermodynamic perturbation theory to study the hydrophobic hydration. The Journal of chemical physics. 2013, vol. 139, no. 2, art. no. 024101 (6 str.),

44. HUŠ, Matej, URBIČ, Tomaž. Core-softened fluids as a model for water and the hydrophobic effect. The Journal of chemical physics. 2013, vol. 139, no. 11, art. no. 114504 (8 str.),

45. URBIČ, Tomaž. Two-dimensional core-softened model with water like properties : Monte Carlo and integral equation study. The Journal of chemical physics. 2013, vol. 139, no. 16, art. no. 164515 (6 str.),

46. URBIČ, Tomaž. Liquid-liquid phase transition in a two-dimensional system with anomalous liquid properties. Physical review. E, Statistical, nonlinear, and soft matter physics. 2013, vol. 88, no. 6, art. no. 062303 (str. 1-5),

47. HUŠ, Matej, URBIČ, Tomaž. Quantum chemical tests of water-water potential for interaction site water models. Acta chimica slovenica. [Tiskana izd.]. 2012, vol. 59, no. 3, str. 541-547.

48. URBIČ, Tomaž, FENNELL, Christopher J., DILL, Ken A. A microscopic theory of solvation of monoions. Acta chimica slovenica. [Tiskana izd.]. 2012, vol. 59, no. 3, str. 554-558.

49. HUŠ, Matej, URBIČ, Tomaž. Strength of hydrogen bonds of water depends on local environment. The Journal of chemical physics. 2012, vol. 136, no. 14, art. no. 144305 (7 str.). ISSN 0021-9606.

50. LUKŠIČ, Miha, URBIČ, Tomaž, HRIBAR-LEE, Barbara, DILL, Ken A. Simple model of hydrophobic hydration. The journal of physical chemistry. B, Condensed matter, materials, surfaces, interfaces & biophysical. 2012, vol. 116, no. 21, str. 6177-6186.

51. URBIČ, Tomaž. Analytical model for three-dimensional Mercedes-Benz water molecules. Physical review. E, Statistical, nonlinear, and soft matter physics. 2012, vol. e85, no. 6, art. no. 061503 (7 str.).

52. URBIČ, Tomaž, HOLOVKO, Myroslav. Mercedes-Benz water molecules near hydrophobic wall : integral equation theories vs Monte Carlo simulations. The Journal of chemical physics. 2011, vol. 135, no. 13, art. no. 134706 (9 str.).

53. URBIČ, Tomaž, DILL, Ken A. A statistical mechanical theory for a two-dimensional model of water. The Journal of chemical physics. 2010, vol. 132, no. 22, art. no. 224507 (9 str.).

54. BIZJAK, Alan, URBIČ, Tomaž, VLACHY, Vojko. Phase diagram of the Lennard-Jones system of particles from the cell model and thermodynamic perturbation theory. Acta chimica slovenica. [Tiskana izd.]. 2009, vol. 56, no. 1, str. 166-171.

55. BIZJAK, Alan, URBIČ, Tomaž, VLACHY, Vojko, DILL, Ken A. Theory for the three-dimensional Mercedes-Benz model of water. The Journal of chemical physics. 2009, vol. 131, no. 19, art. no. 194504 (7 str.).

56. URBIČ, Tjaša, URBIČ, Tomaž, AVBELJ, Franc, DILL, Ken A. Molecular simulations find stable structures in fragments of protein G. Acta chimica slovenica. [Tiskana izd.]. 2008, vol. 55, no. 2, str. 385-395.

57. CERAR, Janez, URBIČ, Tomaž. Viscosity and electrophoretic mobility of cesium fullerenehexamalonate in aqueous solutions : comparing experiments and theories on nanometer-sized spherical polyelectrolyte. The journal of physical chemistry. B, Condensed matter, materials, surfaces, interfaces & biophysical. 2008, vol. 112, no. 39, str. 12240-12248.

58. URBIČ, Tomaž, VLACHY, Vojko. Solvation of two-dimensional Lennard-Jones solutes. Thermodynamic perturbation theory and Monte Carlo simulations. Acta chimica slovenica. [Tiskana izd.]. 2007, vol. 54, no. 3, str. 437-444,

59. BIZJAK, Alan, URBIČ, Tomaž, VLACHY, Vojko, DILL, Ken A. The three-dimensional "Mercedes Benz" model of water. Acta chimica slovenica. [Tiskana izd.]. 2007, vol. 54, no. 3, str. 532-537,

60. URBIČ, Tomaž, VLACHY, Vojko, KALYUZHNYI, Yurij V., DILL, Ken A. Theory for the solvation of nonpolar solutes in water. The Journal of chemical physics. 2007, vol. 127, no. 17, art. no. 174505 (9 str.).

61. URBIČ, Tomaž, VLACHY, Vojko, KALYUZHNYI, Yurij V., DILL, Ken A. An improved thermodynamic perturbation theory for Mercedes-Benz water. The Journal of chemical physics. 2007, vol. 127, no. 17, art. no. 174511 (4 str.).

62. URBIČ, Tomaž, VLACHY, Vojko, DILL, Ken A. Confined water : a Mercedes-Benz model study. The journal of physical chemistry. B, Condensed matter, materials, surfaces, interfaces & biophysical. 2006, vol. 110, no. 10, str. 4963-4970,

63. URBIČ, Tomaž, VLACHY, Vojko, PIZIO, Orest, DILL, Ken A. Water-like fluid in the presence of Lennard-Jones obstacles : predictions of an associative replica Ornstein-Zernike theory. Journal of molecular liquids. [Print ed.]. 2004, vol. 112, no. 1/2, str. 71-80,

64. URBIČ, Tomaž, VLACHY, Vojko, KALYUZHNYI, Yu. V., DILL, K. A. Orientation-dependent integral equation theory for a two-dimensional model of water. The Journal of chemical physics. 2003, vol. 118, no. 12, str. 5516-5525,

65. URBIČ, Tomaž, VLACHY, Vojko, KALYUZHNYI, Yu. V., SOUTHALL, N. T., DILL, K. A. A two-dimensonal model of water : solvation of nonpolar solutes. The Journal of chemical physics. 2002, vol. 116, no. 2, str. 723-729,

66. URBIČ, Tomaž, BEŠTER-ROGAČ, Marija, JAMNIK, Andrej, STARE, Jernej. Small-angle x-ray scattering functions of rodlike polyelectrolytes in aqueous solutions. Acta chimica slovenica. [Tiskana izd.]. September 2001, vol. 48, no. 3, str. 343-352,

67. URBIČ, Tomaž, VLACHY, Vojko, KALYUZHNYI, Yu. V., SOUTHALL, N. T., DILL, K. A. A two dimensional model of water : theory and computer simulations. The Journal of chemical physics. February 2000, vol. 112, no. 6, str. 2843-2848,

68. URBIČ, Tomaž, VLACHY, Vojko. Structure and thermodynamics of a two-dimensional model of electrolyte solutions. Acta chimica slovenica. [Tiskana izd.]. 1999, letn. 46, štev. 4, str. 531-541, ilustr. ISSN 1318-0207.